Package: LinkageMapView 2.1.2

Steven Blanchard

LinkageMapView: Plot Linkage Group Maps with Quantitative Trait Loci

Produces high resolution, publication ready linkage maps and quantitative trait loci maps. Input can be output from 'R/qtl', simple text or comma delimited files. Output is currently a portable document file.

Authors:Lisa Ouellette [aut], Rob Reid [ctb], Steven Blanchard [cre]

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LinkageMapView.pdf |LinkageMapView.html✨
LinkageMapView/json (API)

# Install 'LinkageMapView' in R:
install.packages('LinkageMapView', repos = c('https://bio-services.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bio-services/linkagemapview/issues

Datasets:
  • carrot - A carrot comparative linkage map data frame kindly provided by Massimo Iorizzo: Cavagnaro et al. BMC Genomics 2014, 15:1118
  • oat - Oat consensus map data frame

On CRAN:

6.46 score 8 stars 72 scripts 230 downloads 15 mentions 2 exports 3 dependencies

Last updated 5 years agofrom:05831b2d3b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 13 2024
R-4.5-winOKOct 13 2024
R-4.5-linuxOKOct 13 2024
R-4.4-winOKOct 13 2024
R-4.4-macOKOct 13 2024
R-4.3-winOKOct 13 2024
R-4.3-macOKOct 13 2024

Exports:lmv.linkage.plotlmvdencolor

Dependencies:plotrixqtlRColorBrewer

LinkageMapView Examples

Lisa A. Ouellette

Rendered fromLinkageMapView.Rmdusingknitr::rmarkdownon Oct 13 2024.

Last update: 2017-04-23
Started: 2017-04-17